{ "_id": "6acf4564d9de2f3f33fc9df3", "Package": "SlideCNA", "Title": "Calls Copy Number Alterations from Slide-Seq Data", "Version": "0.1.0", "Authors@R": "c(person(given = \"Diane\",\nfamily = \"Zhang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"dkzhang711@gmail.com\",\ncomment = c(ORCID = \"0000-0002-0268-4413\")),\nperson(given = \"Johanna\",\nfamily = \"Klughammer\",\nrole = c(\"aut\"),\nemail = \"klughammer@genzentrum.lmu.de\",\ncomment = c(ORCID = \"0000-0002-3628-9278\")),\nperson(given = \"Jan\",\nfamily = \"Watter\",\nrole = c(\"aut\"),\nemail = \"jan.watter@gmail.com\",\ncomment = c(ORCID = \"0000-0001-7519-731X\")),\nperson(\"Broad Institute of MIT and Harvard\", role = c(\"cph\", \"fnd\")))", "Description": "This takes spatial single-cell-type RNA-seq data\n(specifically designed for Slide-seq v2) that calls copy number\nalterations (CNAs) using pseudo-spatial binning, clusters\ncellular units (e.g. beads) based on CNA profile, and\nvisualizes spatial CNA patterns. Documentation about 'SlideCNA'\nis included in the the pre-print by Zhang et al. (2022,\n). The package 'enrichR' (>=\n3.0), conditionally used to annotate SlideCNA-determined\nclusters with gene ontology terms, can be installed at\n or with\ninstall_github(\"wjawaid/enrichR\").", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-14 08:11:47 UTC", "User": "root" }, "Author": "Diane Zhang [aut, cre]\n(), Johanna Klughammer\n[aut] (), Jan Watter\n[aut] (), Broad\nInstitute of MIT and Harvard [cph, fnd]", "Maintainer": "Diane Zhang ", "Config/pak/sysreqs": "cmake libfreetype6-dev libglpk-dev make libicu-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev", "Repository": "https://dzhang777.r-universe.dev", "Date/Publication": "2025-01-23 17:40:05 UTC", "RemoteUrl": "https://github.com/cran/SlideCNA", "RemoteRef": "HEAD", "RemoteSha": "fdea2a492e8474f60b4dd58168977ca7fba5021a", "_user": "dzhang777", "_type": "src", "_file": "SlideCNA_0.1.0.tar.gz", 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